Package weka.experiment

Class ExplicitTestsetResultProducer

  • All Implemented Interfaces:
    java.io.Serializable, AdditionalMeasureProducer, OptionHandler, RevisionHandler, ResultProducer
    public class ExplicitTestsetResultProducer
extends java.lang.Object
implements ResultProducer, OptionHandler, AdditionalMeasureProducer, RevisionHandler
    Loads the external test set and calls the appropriate SplitEvaluator to generate some results.
    The filename of the test set is constructed as follows:
    <dir> + / + <prefix> + <relation-name> + <suffix>
    The relation-name can be modified by using the regular expression to replace the matching sub-string with a specified replacement string. In order to get rid of the string that the Weka filters add to the end of the relation name, just use '.*-weka' as the regular expression to find.
    The suffix determines the type of file to load, i.e., one is not restricted to ARFF files. As long as Weka recognizes the extension specified in the suffix, the data will be loaded with one of Weka's converters.

    Valid options are: 

     -D
 Save raw split evaluator output.
 
     -O <file/directory name/path>
  The filename where raw output will be stored.
  If a directory name is specified then then individual
  outputs will be gzipped, otherwise all output will be
  zipped to the named file. Use in conjuction with -D.
  (default: splitEvalutorOut.zip)
 
     -W <class name>
  The full class name of a SplitEvaluator.
  eg: weka.experiment.ClassifierSplitEvaluator
 
     -R
  Set when data is to be randomized.
 
     -dir <directory>
  The directory containing the test sets.
  (default: current directory)
 
     -prefix <string>
  An optional prefix for the test sets (before the relation name).
 (default: empty string)
 
     -suffix <string>
  The suffix to append to the test set.
  (default: _test.arff)
 
     -find <regular expression>
  The regular expression to search the relation name with.
  Not used if an empty string.
  (default: empty string)
 
     -replace <string>
  The replacement string for the all the matches of '-find'.
  (default: empty string)
 
     Options specific to split evaluator weka.experiment.ClassifierSplitEvaluator:
 
     -W <class name>
  The full class name of the classifier.
  eg: weka.classifiers.bayes.NaiveBayes
 
     -C <index>
  The index of the class for which IR statistics
  are to be output. (default 1)
 
     -I <index>
  The index of an attribute to output in the
  results. This attribute should identify an
  instance in order to know which instances are
  in the test set of a cross validation. if 0
  no output (default 0).
 
     -P
  Add target and prediction columns to the result
  for each fold.
 
     Options specific to classifier weka.classifiers.rules.ZeroR:
 
     -D
  If set, classifier is run in debug mode and
  may output additional info to the console
    All options after -- will be passed to the split evaluator.
    Version:
    $Revision: 10203 $
    Author:
    Len Trigg (trigg@cs.waikato.ac.nz), FracPete (fracpete at waikato dot ac dot nz)
    See Also:
    Serialized Form

    • Field Summary

      Fields 
      Modifier and Type Field Description
      static java.lang.String DATASET_FIELD_NAME
      The name of the key field containing the dataset name.
      static java.lang.String DEFAULT_SUFFIX
      the default suffix.
      static java.lang.String RUN_FIELD_NAME
      The name of the key field containing the run number.
      static java.lang.String TIMESTAMP_FIELD_NAME
      The name of the result field containing the timestamp.

    • Method Summary

      All Methods Static Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void doRun​(int run)
      Gets the results for a specified run number.
      void doRunKeys​(int run)
      Gets the keys for a specified run number.
      java.util.Enumeration<java.lang.String> enumerateMeasures()
      Returns an enumeration of any additional measure names that might be in the SplitEvaluator.
      java.lang.String getCompatibilityState()
      Gets a description of the internal settings of the result producer, sufficient for distinguishing a ResultProducer instance from another with different settings (ignoring those settings set through this interface).
      java.lang.String[] getKeyNames()
      Gets the names of each of the columns produced for a single run.
      java.lang.Object[] getKeyTypes()
      Gets the data types of each of the columns produced for a single run.
      double getMeasure​(java.lang.String additionalMeasureName)
      Returns the value of the named measure.
      java.lang.String[] getOptions()
      Gets the current settings of the result producer.
      java.io.File getOutputFile()
      Get the value of OutputFile.
      boolean getRandomizeData()
      Get if dataset is to be randomized.
      boolean getRawOutput()
      Get if raw split evaluator output is to be saved.
      java.lang.String getRelationFind()
      Returns the currently set regular expression to use on the relation name.
      java.lang.String getRelationReplace()
      Returns the currently set replacement string to use on the relation name.
      java.lang.String[] getResultNames()
      Gets the names of each of the columns produced for a single run.
      java.lang.Object[] getResultTypes()
      Gets the data types of each of the columns produced for a single run.
      java.lang.String getRevision()
      Returns the revision string.
      SplitEvaluator getSplitEvaluator()
      Get the SplitEvaluator.
      java.io.File getTestsetDir()
      Returns the currently set directory for the test sets.
      java.lang.String getTestsetPrefix()
      Returns the currently set prefix.
      java.lang.String getTestsetSuffix()
      Returns the currently set suffix.
      static java.lang.Double getTimestamp()
      Gets a Double representing the current date and time.
      java.lang.String globalInfo()
      Returns a string describing this result producer.
      java.util.Enumeration<Option> listOptions()
      Returns an enumeration describing the available options..
      java.lang.String outputFileTipText()
      Returns the tip text for this property.
      void postProcess()
      Perform any postprocessing.
      void preProcess()
      Prepare to generate results.
      java.lang.String randomizeDataTipText()
      Returns the tip text for this property.
      java.lang.String rawOutputTipText()
      Returns the tip text for this property.
      java.lang.String relationFindTipText()
      Returns the tip text for this property.
      java.lang.String relationReplaceTipText()
      Returns the tip text for this property.
      void setAdditionalMeasures​(java.lang.String[] additionalMeasures)
      Set a list of method names for additional measures to look for in SplitEvaluators.
      void setInstances​(Instances instances)
      Sets the dataset that results will be obtained for.
      void setOptions​(java.lang.String[] options)
      Parses a given list of options.
      void setOutputFile​(java.io.File value)
      Set the value of OutputFile.
      void setRandomizeData​(boolean value)
      Set to true if dataset is to be randomized.
      void setRawOutput​(boolean value)
      Set to true if raw split evaluator output is to be saved.
      void setRelationFind​(java.lang.String value)
      Sets the regular expression to use on the relation name.
      void setRelationReplace​(java.lang.String value)
      Sets the replacement string to use on the relation name.
      void setResultListener​(ResultListener listener)
      Sets the object to send results of each run to.
      void setSplitEvaluator​(SplitEvaluator value)
      Set the SplitEvaluator.
      void setTestsetDir​(java.io.File value)
      Sets the directory to use for the test sets.
      void setTestsetPrefix​(java.lang.String value)
      Sets the prefix to use for the test sets.
      void setTestsetSuffix​(java.lang.String value)
      Sets the suffix to use for the test sets.
      java.lang.String splitEvaluatorTipText()
      Returns the tip text for this property.
      java.lang.String testsetDirTipText()
      Returns the tip text for this property.
      java.lang.String testsetPrefixTipText()
      Returns the tip text for this property.
      java.lang.String testsetSuffixTipText()
      Returns the tip text for this property.
      java.lang.String toString()
      Gets a text descrption of the result producer.

      • Methods inherited from class java.lang.Object

        equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

    • Field Detail

      • DEFAULT_SUFFIX

        public static final java.lang.String DEFAULT_SUFFIX
        the default suffix.
        See Also:
        Constant Field Values

      • DATASET_FIELD_NAME

        public static java.lang.String DATASET_FIELD_NAME
        The name of the key field containing the dataset name.

      • RUN_FIELD_NAME

        public static java.lang.String RUN_FIELD_NAME
        The name of the key field containing the run number.

      • TIMESTAMP_FIELD_NAME

        public static java.lang.String TIMESTAMP_FIELD_NAME
        The name of the result field containing the timestamp.

    • Constructor Detail

      • ExplicitTestsetResultProducer

        public ExplicitTestsetResultProducer()

    • Method Detail

      • globalInfo

        public java.lang.String globalInfo()
        Returns a string describing this result producer.
        Returns:
        a description of the result producer suitable for displaying in the explorer/experimenter gui

      • listOptions

        public java.util.Enumeration<Option> listOptions()
        Returns an enumeration describing the available options..
        Specified by:
        listOptions in interface OptionHandler
        Returns:
        an enumeration of all the available options.

      • setOptions

        public void setOptions​(java.lang.String[] options)
                throws java.lang.Exception
        Parses a given list of options.

        Valid options are: 

         -D
 Save raw split evaluator output.
 
         -O <file/directory name/path>
  The filename where raw output will be stored.
  If a directory name is specified then then individual
  outputs will be gzipped, otherwise all output will be
  zipped to the named file. Use in conjuction with -D.
  (default: splitEvalutorOut.zip)
 
         -W <class name>
  The full class name of a SplitEvaluator.
  eg: weka.experiment.ClassifierSplitEvaluator
 
         -R
  Set when data is to be randomized.
 
         -dir <directory>
  The directory containing the test sets.
  (default: current directory)
 
         -prefix <string>
  An optional prefix for the test sets (before the relation name).
 (default: empty string)
 
         -suffix <string>
  The suffix to append to the test set.
  (default: _test.arff)
 
         -find <regular expression>
  The regular expression to search the relation name with.
  Not used if an empty string.
  (default: empty string)
 
         -replace <string>
  The replacement string for the all the matches of '-find'.
  (default: empty string)
 
         Options specific to split evaluator weka.experiment.ClassifierSplitEvaluator:
 
         -W <class name>
  The full class name of the classifier.
  eg: weka.classifiers.bayes.NaiveBayes
 
         -C <index>
  The index of the class for which IR statistics
  are to be output. (default 1)
 
         -I <index>
  The index of an attribute to output in the
  results. This attribute should identify an
  instance in order to know which instances are
  in the test set of a cross validation. if 0
  no output (default 0).
 
         -P
  Add target and prediction columns to the result
  for each fold.
 
         Options specific to classifier weka.classifiers.rules.ZeroR:
 
         -D
  If set, classifier is run in debug mode and
  may output additional info to the console
        All options after -- will be passed to the split evaluator.
        Specified by:
        setOptions in interface OptionHandler
        Parameters:
        options - the list of options as an array of strings
        Throws:
        java.lang.Exception - if an option is not supported

      • getOptions

        public java.lang.String[] getOptions()
        Gets the current settings of the result producer.
        Specified by:
        getOptions in interface OptionHandler
        Returns:
        an array of strings suitable for passing to setOptions

      • setInstances

        public void setInstances​(Instances instances)
        Sets the dataset that results will be obtained for.
        Specified by:
        setInstances in interface ResultProducer
        Parameters:
        instances - a value of type 'Instances'.

      • setAdditionalMeasures

        public void setAdditionalMeasures​(java.lang.String[] additionalMeasures)
        Set a list of method names for additional measures to look for in SplitEvaluators. This could contain many measures (of which only a subset may be produceable by the current SplitEvaluator) if an experiment is the type that iterates over a set of properties.
        Specified by:
        setAdditionalMeasures in interface ResultProducer
        Parameters:
        additionalMeasures - an array of measure names, null if none

      • enumerateMeasures

        public java.util.Enumeration<java.lang.String> enumerateMeasures()
        Returns an enumeration of any additional measure names that might be in the SplitEvaluator.
        Specified by:
        enumerateMeasures in interface AdditionalMeasureProducer
        Returns:
        an enumeration of the measure names

      • getMeasure

        public double getMeasure​(java.lang.String additionalMeasureName)
        Returns the value of the named measure.
        Specified by:
        getMeasure in interface AdditionalMeasureProducer
        Parameters:
        additionalMeasureName - the name of the measure to query for its value
        Returns:
        the value of the named measure
        Throws:
        java.lang.IllegalArgumentException - if the named measure is not supported

      • setResultListener

        public void setResultListener​(ResultListener listener)
        Sets the object to send results of each run to.
        Specified by:
        setResultListener in interface ResultProducer
        Parameters:
        listener - a value of type 'ResultListener'

      • getTimestamp

        public static java.lang.Double getTimestamp()
        Gets a Double representing the current date and time. eg: 1:46pm on 20/5/1999 -> 19990520.1346
        Returns:
        a value of type Double

      • preProcess

        public void preProcess()
                throws java.lang.Exception
        Prepare to generate results.
        Specified by:
        preProcess in interface ResultProducer
        Throws:
        java.lang.Exception - if an error occurs during preprocessing.

      • postProcess

        public void postProcess()
                 throws java.lang.Exception
        Perform any postprocessing. When this method is called, it indicates that no more requests to generate results for the current experiment will be sent.
        Specified by:
        postProcess in interface ResultProducer
        Throws:
        java.lang.Exception - if an error occurs

      • doRunKeys

        public void doRunKeys​(int run)
               throws java.lang.Exception
        Gets the keys for a specified run number. Different run numbers correspond to different randomizations of the data. Keys produced should be sent to the current ResultListener
        Specified by:
        doRunKeys in interface ResultProducer
        Parameters:
        run - the run number to get keys for.
        Throws:
        java.lang.Exception - if a problem occurs while getting the keys

      • doRun

        public void doRun​(int run)
           throws java.lang.Exception
        Gets the results for a specified run number. Different run numbers correspond to different randomizations of the data. Results produced should be sent to the current ResultListener
        Specified by:
        doRun in interface ResultProducer
        Parameters:
        run - the run number to get results for.
        Throws:
        java.lang.Exception - if a problem occurs while getting the results

      • getKeyNames

        public java.lang.String[] getKeyNames()
        Gets the names of each of the columns produced for a single run. This method should really be static.
        Specified by:
        getKeyNames in interface ResultProducer
        Returns:
        an array containing the name of each column

      • getKeyTypes

        public java.lang.Object[] getKeyTypes()
        Gets the data types of each of the columns produced for a single run. This method should really be static.
        Specified by:
        getKeyTypes in interface ResultProducer
        Returns:
        an array containing objects of the type of each column. The objects should be Strings, or Doubles.

      • getResultNames

        public java.lang.String[] getResultNames()
        Gets the names of each of the columns produced for a single run. This method should really be static.
        Specified by:
        getResultNames in interface ResultProducer
        Returns:
        an array containing the name of each column

      • getResultTypes

        public java.lang.Object[] getResultTypes()
        Gets the data types of each of the columns produced for a single run. This method should really be static.
        Specified by:
        getResultTypes in interface ResultProducer
        Returns:
        an array containing objects of the type of each column. The objects should be Strings, or Doubles.

      • getCompatibilityState

        public java.lang.String getCompatibilityState()
        Gets a description of the internal settings of the result producer, sufficient for distinguishing a ResultProducer instance from another with different settings (ignoring those settings set through this interface). For example, a cross-validation ResultProducer may have a setting for the number of folds. For a given state, the results produced should be compatible. Typically if a ResultProducer is an OptionHandler, this string will represent the command line arguments required to set the ResultProducer to that state.
        Specified by:
        getCompatibilityState in interface ResultProducer
        Returns:
        the description of the ResultProducer state, or null if no state is defined

      • outputFileTipText

        public java.lang.String outputFileTipText()
        Returns the tip text for this property.
        Returns:
        tip text for this property suitable for displaying in the explorer/experimenter gui

      • getOutputFile

        public java.io.File getOutputFile()
        Get the value of OutputFile.
        Returns:
        Value of OutputFile.

      • setOutputFile

        public void setOutputFile​(java.io.File value)
        Set the value of OutputFile.
        Parameters:
        value - Value to assign to OutputFile.

      • randomizeDataTipText

        public java.lang.String randomizeDataTipText()
        Returns the tip text for this property.
        Returns:
        tip text for this property suitable for displaying in the explorer/experimenter gui

      • getRandomizeData

        public boolean getRandomizeData()
        Get if dataset is to be randomized.
        Returns:
        true if dataset is to be randomized

      • setRandomizeData

        public void setRandomizeData​(boolean value)
        Set to true if dataset is to be randomized.
        Parameters:
        value - true if dataset is to be randomized

      • rawOutputTipText

        public java.lang.String rawOutputTipText()
        Returns the tip text for this property.
        Returns:
        tip text for this property suitable for displaying in the explorer/experimenter gui

      • getRawOutput

        public boolean getRawOutput()
        Get if raw split evaluator output is to be saved.
        Returns:
        true if raw split evalutor output is to be saved

      • setRawOutput

        public void setRawOutput​(boolean value)
        Set to true if raw split evaluator output is to be saved.
        Parameters:
        value - true if output is to be saved

      • splitEvaluatorTipText

        public java.lang.String splitEvaluatorTipText()
        Returns the tip text for this property.
        Returns:
        tip text for this property suitable for displaying in the explorer/experimenter gui

      • getSplitEvaluator

        public SplitEvaluator getSplitEvaluator()
        Get the SplitEvaluator.
        Returns:
        the SplitEvaluator.

      • setSplitEvaluator

        public void setSplitEvaluator​(SplitEvaluator value)
        Set the SplitEvaluator.
        Parameters:
        value - new SplitEvaluator to use.

      • testsetDirTipText

        public java.lang.String testsetDirTipText()
        Returns the tip text for this property.
        Returns:
        tip text for this property suitable for displaying in the explorer/experimenter gui

      • getTestsetDir

        public java.io.File getTestsetDir()
        Returns the currently set directory for the test sets.
        Returns:
        the directory

      • setTestsetDir

        public void setTestsetDir​(java.io.File value)
        Sets the directory to use for the test sets.
        Parameters:
        value - the directory to use

      • testsetPrefixTipText

        public java.lang.String testsetPrefixTipText()
        Returns the tip text for this property.
        Returns:
        tip text for this property suitable for displaying in the explorer/experimenter gui

      • getTestsetPrefix

        public java.lang.String getTestsetPrefix()
        Returns the currently set prefix.
        Returns:
        the prefix

      • setTestsetPrefix

        public void setTestsetPrefix​(java.lang.String value)
        Sets the prefix to use for the test sets.
        Parameters:
        value - the prefix

      • testsetSuffixTipText

        public java.lang.String testsetSuffixTipText()
        Returns the tip text for this property.
        Returns:
        tip text for this property suitable for displaying in the explorer/experimenter gui

      • getTestsetSuffix

        public java.lang.String getTestsetSuffix()
        Returns the currently set suffix.
        Returns:
        the suffix

      • setTestsetSuffix

        public void setTestsetSuffix​(java.lang.String value)
        Sets the suffix to use for the test sets.
        Parameters:
        value - the suffix

      • relationFindTipText

        public java.lang.String relationFindTipText()
        Returns the tip text for this property.
        Returns:
        tip text for this property suitable for displaying in the explorer/experimenter gui

      • getRelationFind

        public java.lang.String getRelationFind()
        Returns the currently set regular expression to use on the relation name.
        Returns:
        the regular expression

      • setRelationFind

        public void setRelationFind​(java.lang.String value)
        Sets the regular expression to use on the relation name.
        Parameters:
        value - the regular expression

      • relationReplaceTipText

        public java.lang.String relationReplaceTipText()
        Returns the tip text for this property.
        Returns:
        tip text for this property suitable for displaying in the explorer/experimenter gui

      • getRelationReplace

        public java.lang.String getRelationReplace()
        Returns the currently set replacement string to use on the relation name.
        Returns:
        the replacement string

      • setRelationReplace

        public void setRelationReplace​(java.lang.String value)
        Sets the replacement string to use on the relation name.
        Parameters:
        value - the regular expression

      • toString

        public java.lang.String toString()
        Gets a text descrption of the result producer.
        Overrides:
        toString in class java.lang.Object
        Returns:
        a text description of the result producer.

      • getRevision

        public java.lang.String getRevision()
        Returns the revision string.
        Specified by:
        getRevision in interface RevisionHandler
        Returns:
        the revision